269393 (SQDB1) PLN02572Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269393	chr_8	(SQDB1) PLN02572	1181716	1184094	-	PLN02572

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452379	Thaps269393.2, Thaps269393.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0060

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0239	0.34	160 920

Most Highly Correlated Transcripts

ThpsCp134 (rpl34) ribosomal protein L34 0.9195	ThpsCp082 (rpl34) ribosomal protein L34 0.8929	ThpsCp028 (rpl11) ribosomal protein L11 0.8927	ThpsCp029 (rpl1) ribosomal protein L1 0.8909	bd1095 (bd1095) NA 0.8893	3143 (DES9) Delta12-FADS-like 0.8877
24832 hypothetical protein 0.8785	ThpsCp135 (secA) preprotein translocase subunit SecA 0.8725	270396 hypothetical protein 0.8683	bd1023 (bd1023) atpD 0.8674

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NADB_Rossmann superfamily		Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD...	-	523.874	0	109 - 488	superfamily	263925
PLN02572		UDP-sulfoquinovose synthase	-	709.644	0	48 - 508	multi-dom	215310

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_21201	PHATRDRAFT_21201	215561	321775	466230	Cre16.g656400.t1.2	AT4G33030.1	Not available

KEGG

KEGG description	KEGG Pathway
Glycerolipid metabolism	map00561

GO Terms

GO:0046507 -

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