269572 Endonuclease_1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
269572	chr_11a	Endonuclease_1 superfamily	608587	610200	+	Endonuclease_1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444471	Thaps269572.2, Thaps269572.3, Thaps269572.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0284

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0041	0.50

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9822	27435 PAH 0.9148	269307 hypothetical protein 0.9076	24642 PLN02286 0.9014	264576 lysozyme_like superfamily 0.9008	269439 hypothetical protein 0.8984
262152 hypothetical protein 0.896	31437 Peptidase_M16 superfamily 0.8927	262004 CAP_ED 0.8884	2954 hypothetical protein 0.8862

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Endonuclease_1 superfamily		Endonuclease I; Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) Escherichia coli...	-	149.823	3.87E-42	14 - 206	superfamily	260742

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48915	PHATRDRAFT_48915	162267	228977	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004518 -

Add comment

Log in to post comments