269718 sucA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269718 chr_13 sucA 999554 1003615 + sucA

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0366

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0004
 0.42

Most Highly Correlated Transcripts

22764

hypothetical protein
0.8183

24171

COP-gamma_platf superfamily
0.8168

21530

hypothetical protein
0.8164

5337

hypothetical protein
0.8046

8762

SNF2_N
0.793

22918

hypothetical protein
0.7895

22520

RecN
0.7881

20828

hypothetical protein
0.7788

5093

hypothetical protein
0.7786

261692

SYLF_FYVE
0.7762

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of... cl01629 467.006 1.16E-156 264 - 537 specific 238974
TPP_enzymes superfamily Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes... - 467.006 1.16E-156 264 - 537 superfamily 261022
Transket_pyr Transketolase, pyrimidine binding domain; This family includes transketolase enzymes, pyruvate... cl11410 159.227 2.44E-44 656 - 884 specific 251526
TPP_enzyme_PYR superfamily Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes; Thiamine... - 159.227 2.44E-44 656 - 884 superfamily 264357
sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed - 1308.18 0 62 - 1037 multi-dom 236499

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29016 PHATRDRAFT_29016 232580 253580 125654 Cre12.g537200.t1.2 AT5G65750.1 561452

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0008152 GO:0016624 GO:0004591 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016624

oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide.
GO Category: 
MF

GO:0004591

oxoglutarate dehydrogenase (succinyl-transferring) activity

Details: 
Catalysis of the reaction: 2-oxoglutarate + lipoamide = S-succinyldihydrolipoamide + CO2.
GO Category: 
MF

Add comment

Log in to post comments