273 PRK04004
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
273 chr_2 PRK04004 1577690 1580153 - PRK04004

Synonyms

NCBI ID Ensembl Genomes exon ID
7446674 Thaps273.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0042

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0236
 0.32

Most Highly Correlated Transcripts

6610

hypothetical protein
0.9007

35164

acolac_lg
0.8978

511

(GBP1) PRK09601
0.8964

260833

Uup
0.8907

22879

hypothetical protein
0.8807

36334

Uup
0.8744

33044

PLN02502
0.8699

268443

SAICAR_synt_Sc
0.8647

40200

TRX_reduct
0.8633

38475

HA2
0.8632

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF2_eIF5B Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; IF2/eIF5B contribute to... cl17170 235.444 3.45E-72 225 - 441 specific 206674
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 235.444 3.45E-72 225 - 441 superfamily 266525
aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a... cl02787 164.247 2.05E-47 453 - 562 specific 239674
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 164.247 2.05E-47 453 - 562 superfamily 261449
PRK04004 translation initiation factor IF-2; Validated - 533.989 1.97E-180 222 - 806 multi-dom 235195

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16603 PHATRDRAFT_16603 178267 183872 66324 Cre02.g078100.t1.1 AT1G21160.1 477507

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003743 GO:0005525 GO:0006413 GO:0006412 GO:0003924 GO:0008547 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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