38475 HA2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38475 chr_20 HA2 94186 97974 + HA2

Synonyms

NCBI ID Ensembl Genomes exon ID
7448488 Thaps38475.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0289

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0186
 0.38

Most Highly Correlated Transcripts

22302

Peptidase_C19 superfamily
0.9069

25142

SWIRM
0.9049

32229

MogA_MoaB
0.9034

264548

FusA
0.9022

268010

(RPC2) PRK08565
0.902

8995

hypothetical protein
0.893

268136

COG1054
0.8913

264498

PRK00142
0.8901

262555

AAT_I superfamily
0.8891

31932

hypothetical protein
0.8875

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 119.364 1.76E-30 632 - 770 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 119.364 1.76E-30 632 - 770 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 62.2552 4.17E-11 795 - 953 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 62.2552 4.17E-11 795 - 953 superfamily 238034
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 127.333 6.06E-34 1007 - 1099 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 127.333 6.06E-34 1007 - 1099 superfamily 262181
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 123.562 2.00E-32 1133 - 1236 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 123.562 2.00E-32 1133 - 1236 superfamily 254381
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 110.274 8.37E-27 609 - 796 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
bd755 Not available 210694 211264 Not available Not available AT4G16680.1 553525

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0004386 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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