29018 NMD3Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
29018	chr_7	NMD3	1631053	1633357	-	NMD3

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450722	Thaps29018.3, Thaps29018.2, Thaps29018.1, Thaps29018.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0166	0.18	30 800

Most Highly Correlated Transcripts

bd1667 (bd1667) Mpp10 0.9597	23336 SRP40_C superfamily 0.9585	bd1709 (bd1709) NA 0.9543	21222 SrmB 0.9437	36434 DUF1253 0.9436	268598 COG1094 0.9401
261145 Lactamase_B superfamily 0.9397	21397 Nop52 superfamily 0.9395	22672 hypothetical protein 0.9386	23900 hypothetical protein 0.937

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NMD3 superfamily		NMD3 family; The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal...	-	234.895	1.24E-72	29 - 266	superfamily	252919
NMD3 superfamily		NMD3 family; The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal...	-	234.895	1.24E-72	29 - 266	superfamily	252919

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_15862	PHATRDRAFT_15862	203201	296979	255655	Cre15.g640250.t1.2	AT2G03820.1	480926

KEGG

KEGG description	KEGG Pathway
RNA transport	map03013

GO Terms

Not available -

Add comment

Log in to post comments