268598 COG1094Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268598	chr_4	COG1094	175996	177543	+	COG1094

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442045	Thaps268598.2, Thaps268598.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0199	0.24	14 45

Most Highly Correlated Transcripts

268145 PLN00040 0.9502	29705 18S_RNA_Rcl1p 0.9478	262041 MIF4G 0.9462	262018 hypothetical protein 0.9452	29018 NMD3 0.9401	268596 CBF 0.9387
6835 DUF947 0.9383	27873 PLN02274 0.9372	24439 hypothetical protein 0.9367	34413 RRM_ABT1_like 0.9357

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG1094		Predicted RNA-binding protein (contains KH domains) [General function prediction only]	-	182.876	3.09E-55	62 - 247	multi-dom	224019

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45441	PHATRDRAFT_45441	186837	314684	370297	Cre12.g508200.t1.2	AT5G08420.1	477367

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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