29228 (GcpE) PRK02048
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29228 chr_8 (GcpE) PRK02048 998619 1001698 - PRK02048

Synonyms

NCBI ID Ensembl Genomes exon ID
7452877 Thaps29228.2, Thaps29228.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0038
 0.59

Most Highly Correlated Transcripts

bd812

(bd812) NA
0.9029

ThpsCp134

(rpl34) ribosomal protein L34
0.8737

ThpsCp082

(rpl34) ribosomal protein L34
0.8534

270222

0.8436

24832

hypothetical protein
0.8291

6610

hypothetical protein
0.8103

7230

SGL
0.8085

269393

(SQDB1) PLN02572
0.8066

ThpsCp116

(rps11) ribosomal protein S11
0.8039

bd811

(bd811) NA
0.7952

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GcpE superfamily GcpE protein; In a variety of organisms, including plants and several eubacteria, isoprenoids are... - 169.999 4.34E-47 515 - 669 superfamily 267853
GcpE superfamily GcpE protein; In a variety of organisms, including plants and several eubacteria, isoprenoids are... - 169.999 4.34E-47 515 - 669 superfamily 267853
PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional - 524.012 4.73E-178 7 - 671 multi-dom 179361

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44955 PHATRDRAFT_44955 259614 287456 442353 Cre12.g490350.t1.1 AT5G60600.3 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0016114 GO:0046429 -

GO:0016114

terpenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
GO Category: 
BP

GO:0046429

4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity

Details: 
Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + H2O + 2 oxidized ferredoxin = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + 2 reduced ferredoxin.
GO Category: 
MF

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