7230 SGLThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
7230	chr_7	SGL	1650204	1650977	+	SGL

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450570	Thaps7230.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0059

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0239	0.34	160 920

Most Highly Correlated Transcripts

bd1306 (bd1306) NA 0.9369	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9365	bd1645 (bd1645) tpt 0.9313	bd208 (bd208) DUF3529 0.9299	bd1820 (bd1820) Fasciclin 0.9191	bd1765 (bd1765) NA 0.9145
270334 hypothetical protein 0.9112	bd218 (bd218) Chloroa_b-bind superfamily 0.906	bd1380 (bd1380) ycf39 0.9038	23291 hypothetical protein 0.9035

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SGL		SMP-30/Gluconolaconase/LRE-like region; This family describes a region that is found in proteins...	-	166.657	3.14E-50	5 - 227	multi-dom	254808

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49486	PHATRDRAFT_49486	151856	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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