31510 TIGR00049Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31510	chr_1	TIGR00049	519529	520396	-	TIGR00049

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445307	Thaps31510.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0218

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0274	0.39	0.0012 6

Most Highly Correlated Transcripts

31845 PLN02428 0.8697	3426 zf-DNL superfamily 0.8681	3803 hypothetical protein 0.8663	2409 MPN_NPL4 0.8657	5038 DUF179 0.865	22792 Rab1_Ypt1 0.8645
5701 hypothetical protein 0.8643	9462 hypothetical protein 0.8641	1871 hypothetical protein 0.8636	11165 hypothetical protein 0.8634

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TIGR00049		Iron-sulfur cluster assembly accessory protein; Proteins in this subfamily appear to be associated...	cl00400	129.238	3.01E-37	155 - 278	specific	232799
Fe-S_biosyn superfamily		Iron-sulphur cluster biosynthesis; This family is involved in iron-sulphur cluster biosynthesis....	-	129.238	3.01E-37	155 - 278	superfamily	260406

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_7780	PHATRDRAFT_7780	144710	259411	354398	Cre07.g349600.t1.2	AT5G03905.1	361605

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

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