3222 CAS_like superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3222	chr_3	CAS_like superfamily	433876	435585	+	CAS_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441766	Thaps3222.4, Thaps3222.3, Thaps3222.2, Thaps3222.1, Thaps3222.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0309

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0018	0.42

Most Highly Correlated Transcripts

bd635 (bd635) NA 0.789	21665 hypothetical protein 0.7522	bd923 (bd923) NA 0.7286	bd735 (bd735) NA 0.719	3250 hypothetical protein 0.7142	22835 hypothetical protein 0.7138
3328 hypothetical protein 0.707	20972 hypothetical protein 0.6938	25507 hypothetical protein 0.6932	22332 GAT1_Peptidase_E 0.6841

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAS_like superfamily		Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG)...	-	98.4767	2.07E-23	27 - 332	superfamily	260242

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45755	PHATRDRAFT_45755	Not available	Not available	434635	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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