32295 COG2042Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32295	chr_2	COG2042	1622044	1623234	+	COG2042

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443086	Thaps32295.2, Thaps32295.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0208

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0173	0.35	0.023 0.015

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9279	25068 hypothetical protein 0.9142	36037 Trypsin_2 0.9139	37934 GRX_PICOT_like 0.9039	41655 Chloroa_b-bind 0.8974	22673 NA 0.8967
18462 EMP24_GP25L 0.8961	260846 steroid binding protein 1 0.8915	30701 PRK05279 0.8902	8065 hypothetical protein 0.8889

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF367 superfamily		Domain of unknown function (DUF367); Domain of unknown function (DUF367).	-	188.329	1.02E-58	133 - 259	superfamily	112833
COG2042		Uncharacterized conserved protein [Function unknown]	-	222.6	2.68E-71	95 - 259	multi-dom	224953

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9706	PHATRDRAFT_9706	269831	163853	56186	Cre17.g698950.t1.2	AT5G10070.1	362612

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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