33161 prfA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33161 chr_3 prfA 1269688 1271125 + prfA

Synonyms

NCBI ID Ensembl Genomes exon ID
7451713 Thaps33161.3, Thaps33161.2, Thaps33161.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0088
 0.37

Most Highly Correlated Transcripts

21858

PRK11819
0.8977

30939

S1_IF1
0.8944

6610

hypothetical protein
0.8928

8533

hypothetical protein
0.8888

511

(GBP1) PRK09601
0.8854

40034

thrS
0.8776

36007

Aldolase_II superfamily
0.8764

40028

PLN02286
0.8745

5656

DUF1823 superfamily
0.8744

6010

AP_muniscins_like_MHD
0.8688

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RF-1 RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a... cl17422 161.197 5.37E-48 265 - 378 specific 249886
RF-1 superfamily RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a... - 161.197 5.37E-48 265 - 378 superfamily 266672
PCRF This domain is found in peptide chain release factors; This domain is found in peptide chain... cl17745 158.395 7.55E-47 121 - 236 specific 214923
PCRF superfamily PCRF domain; This domain is found in peptide chain release factors. - 158.395 7.55E-47 121 - 236 superfamily 266807
prfA peptide chain release factor 1; Validated - 541.206 0 57 - 414 multi-dom 234801

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36081 PHATRDRAFT_36081 186240 190667 66652 Cre16.g673617.t1.1 AT3G62910.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003747 GO:0006415 GO:0005737 GO:0016149 GO:0004045 -

GO:0003747

translation release factor activity

Details: 
Involved in catalyzing the release of a nascent polypeptide chain from a ribosome.
GO Category: 
MF

GO:0006415

translational termination

Details: 
The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).
GO Category: 
BP

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0016149

translation release factor activity, codon specific

Details: 
A translation release factor that is specific for one or more particular termination codons; acts at the ribosomal A-site and require polypeptidyl-tRNA at the P-site.
GO Category: 
MF

GO:0004045

aminoacyl-tRNA hydrolase activity

Details: 
Catalysis of the reaction: N-substituted aminoacyl-tRNA + H2O = N-substituted amino acid + tRNA.
GO Category: 
MF

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