33454 Ac_CoA_lig_AcsA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33454 chr_4 Ac_CoA_lig_AcsA 1493546 1496158 - Ac_CoA_lig_AcsA

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps33454.3, Thaps33454.1, Thaps33454.4, Thaps33454.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0067

Most Highly Correlated Transcripts

33454

Ac_CoA_lig_AcsA
1

bd1154

(bd1154) tpt
0.9311

bd1652

(bd1652) ABC_ATPase superfamily
0.9197

bd211

(bd211) Maf_Ham1 superfamily
0.8897

9017

hypothetical protein
0.8849

bd1857

(bd1857) DnaJ
0.8845

24414

(MAP2) PTZ00053
0.8819

bd1306

(bd1306) NA
0.8767

40925

(RPB21) PRK08565
0.8765

bd208

(bd208) DUF3529
0.8751

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ACS Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme); Acetyl-CoA... cl17068 1012.08 0 123 - 755 specific 213313
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 1012.08 0 123 - 755 superfamily 266508
Ac_CoA_lig_AcsA acetate--CoA ligase; This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA... - 1011.78 0 117 - 764 multi-dom 233770

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd645 PHATRDRAFT_bd645 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0003987 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0003987

acetate-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA.
GO Category: 
MF

Add comment

Log in to post comments