33558 secA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33558 chr_4 secA 1133251 1136452 - secA

Synonyms

NCBI ID Ensembl Genomes exon ID
7453389 Thaps33558.1, Thaps33558.2, Thaps33558.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0060

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0108
 0.45

Most Highly Correlated Transcripts

30701

PRK05279
0.8792

1014

hypothetical protein
0.8791

3903

NADB_Rossmann superfamily
0.8698

36007

Aldolase_II superfamily
0.8653

267979

HCO3_cotransp superfamily
0.8641

35136

NA
0.8622

23415

hypothetical protein
0.8609

40001

PRK05433
0.8542

41655

Chloroa_b-bind
0.8519

9976

hypothetical protein
0.8516

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SecA_SW superfamily SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with... - 141.939 7.55E-38 778 - 994 superfamily 254253
SecA_SW superfamily SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with... - 141.939 7.55E-38 778 - 994 superfamily 254253
SecA_PP_bind SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction... cl03078 131.827 1.68E-35 318 - 431 specific 250319
SecA_PP_bind superfamily SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction... - 131.827 1.68E-35 318 - 431 superfamily 261576
secA preprotein translocase subunit SecA; Reviewed - 962.2 0 94 - 996 multi-dom 237257

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9327 PHATRDRAFT_9327 183536 234817 423357 Cre12.g517900.t1.1 AT1G21650.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0006605 GO:0006886 GO:0016020 GO:0017038 GO:0005515 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006605

protein targeting

Details: 
The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0017038

protein import

Details: 
The directed movement of proteins into a cell or organelle.
GO Category: 
BP

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

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