34170 M18_DAP
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34170 chr_5 M18_DAP 1121998 1123866 - M18_DAP

Synonyms

NCBI ID Ensembl Genomes exon ID
7450056 Thaps34170.3, Thaps34170.2, Thaps34170.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0039

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0108
 0.45

Most Highly Correlated Transcripts

30701

PRK05279
0.9078

41655

Chloroa_b-bind
0.8907

269624

TIM_phosphate_binding superfamily
0.878

39941

PRK13357
0.8702

37934

GRX_PICOT_like
0.8697

35136

NA
0.8602

9976

hypothetical protein
0.8586

6010

AP_muniscins_like_MHD
0.8568

26190

SHMT
0.8536

9049

hypothetical protein
0.8525

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
M18_DAP M18 Peptidase Aspartyl aminopeptidase; Peptidase M18 family, Aspartyl aminopeptidase (DAP; EC 3.4.... cl14876 642.958 0 76 - 539 specific 193534
Zinc_peptidase_like superfamily Zinc peptidases M18, M20, M28, and M42; Zinc peptidases play vital roles in metabolic and signaling... - 642.958 0 76 - 539 superfamily 265470

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20708 PHATRDRAFT_20708 Not available Not available Not available Cre10.g435300.t2.1 AT5G60160.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004250 GO:0005773 GO:0006508 GO:0042576 -

GO:0004250

NA

Details: 
NA
GO Category: 
NA

GO:0005773

vacuole

Details: 
A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.
GO Category: 
CC

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0042576

NA

Details: 
NA
GO Category: 
NA

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