34620 PX_SNX1_2_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34620 chr_6 PX_SNX1_2_like 187118 188740 - PX_SNX1_2_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7442335 Thaps34620.3, Thaps34620.2, Thaps34620.4, Thaps34620.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0451

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0107
 0.36

Most Highly Correlated Transcripts

11478

hypothetical protein
0.8608

263012

Ras_like_GTPase superfamily
0.8457

37942

hypothetical protein
0.8425

4411

hypothetical protein
0.8213

7725

hypothetical protein
0.8124

263610

COG3899
0.8071

bd643

(bd643) NA
0.8052

35126

S_TKc
0.8024

21680

hypothetical protein
0.8017

20746

hypothetical protein
0.7999

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2; The PX domain is a... cl02563 182.008 1.47E-55 13 - 125 specific 132769
PX_domain superfamily The Phox Homology domain, a phosphoinositide binding module; The PX domain is a phosphoinositide (... - 182.008 1.47E-55 13 - 125 superfamily 261344
BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins; BAR domains are dimerization, lipid binding... cl12013 181.4 4.99E-54 169 - 373 specific 153280
BAR superfamily The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects... - 181.4 4.99E-54 169 - 373 superfamily 264507

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_3137 PHATRDRAFT_3137 167152 319689 431836 Not available AT5G06140.1 563523

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007242 -

GO:0007242

NA

Details: 
NA
GO Category: 
NA

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