34795 Cas1_AcylT superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34795	chr_6	Cas1_AcylT superfamily	881470	884845	+	Cas1_AcylT superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445932	Thaps34795.2, Thaps34795.3, Thaps34795.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0147

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0036	0.41

Most Highly Correlated Transcripts

269100 S_TKc 0.9453	596 Adaptin_N 0.9346	21274 hypothetical protein 0.9329	12500 SNF2_N 0.9268	263963 Adaptin_N 0.9251	8518 hypothetical protein 0.9244
35410 Transglut_core 0.9129	32704 PKc_like superfamily 0.9127	22666 hypothetical protein 0.9125	5551 hypothetical protein 0.911

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Cas1_AcylT superfamily		10 TM Acyl Transferase domain found in Cas1p; Cas1p protein of Cryptococcus neoformans is required...	-	249.659	1.55E-72	90 - 517	superfamily	254425

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_20024	PHATRDRAFT_20024	245398	297551	455633	Cre09.g389950.t1.2	AT5G46340.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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