34810 Calreticulin
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34810 chr_6 Calreticulin 1696520 1698010 - Calreticulin

Synonyms

NCBI ID Ensembl Genomes exon ID
7442786 Thaps34810.2, Thaps34810.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0140
 0.29

Most Highly Correlated Transcripts

21978

hypothetical protein
0.9193

3071

NA
0.9021

23616

Peptidase_A22B superfamily
0.9014

8303

Glyco_trans_1_2
0.8947

1926

hypothetical protein
0.8932

270222

0.8927

6979

GATase1_Hsp31_like
0.8925

33104

LDH_like_2
0.8895

22766

PRK05218
0.8894

4318

TIM21 superfamily
0.8822

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Calreticulin superfamily Calreticulin family; Calreticulin family. - 388.585 5.21E-133 19 - 340 superfamily 249724
Calreticulin superfamily Calreticulin family; Calreticulin family. - 388.585 5.21E-133 19 - 340 superfamily 249724

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41172 PHATRDRAFT_41172 171081 324417 446255 Cre01.g038400.t1.2 AT1G56340.2 353812

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0005509 GO:0005783 GO:0006457 GO:0051082 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0005783

endoplasmic reticulum

Details: 
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO Category: 
CC

GO:0006457

protein folding

Details: 
The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
GO Category: 
BP

GO:0051082

unfolded protein binding

Details: 
Interacting selectively and non-covalently with an unfolded protein.
GO Category: 
MF

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