36334 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36334 chr_10 Uup 208031 209989 + Uup

Synonyms

NCBI ID Ensembl Genomes exon ID
7451046 Thaps36334.1, Thaps36334.2, Thaps36334.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0157
 0.39

Most Highly Correlated Transcripts

35164

acolac_lg
0.9196

32325

ABC_ATPase superfamily
0.9121

2392

hypothetical protein
0.8996

35224

Aldo_ket_red
0.8952

23210

hypothetical protein
0.8944

41038

(P5CS) PLN02418
0.8929

25365

hypothetical protein
0.8905

9040

ELP3
0.8897

27873

PLN02274
0.8877

22427

hypothetical protein
0.8865

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 163.003 2.94E-47 24 - 247 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 163.003 2.94E-47 24 - 247 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 163.003 2.94E-47 24 - 247 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 163.003 2.94E-47 24 - 247 superfamily 266551
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 497.158 5.31E-170 23 - 560 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51174 PHATRDRAFT_51174 192795 289212 Not available Cre01.g034950.t1.2 AT3G54540.1 555261

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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