36506 PseudoU_synth superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36506 chr_10 PseudoU_synth superfamily 824535 826655 + PseudoU_synth superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446899 Thaps36506.1, Thaps36506.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0292

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0070
 0.44

Most Highly Correlated Transcripts

bd446

(bd446) HrpA
0.902

32522

rad3
0.8751

261688

hypothetical protein
0.8677

264679

Syja_N
0.8649

bd1465

(bd1465) PKc_like superfamily
0.863

261180

LRR_RI superfamily
0.863

5694

hypothetical protein
0.8624

bd875

(bd875) NA
0.861

11371

hypothetical protein
0.8564

268475

C2 superfamily
0.8562

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 297.66 144 - 482 superfamily 260207
hisT_truA tRNA pseudouridine(38-40) synthase; Members of this family are the tRNA modification enzyme TruA,... - 157.091 140 - 470 multi-dom 232810

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5217 PHATRDRAFT_5217 152582 148325 Not available Cre02.g086050.t1.1 AT1G34150.1 346666

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 GO:0008033 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

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