37047 PH-like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37047	chr_13	PH-like superfamily	56016	57625	+	PH-like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450548	Thaps37047.1, Thaps37047.2, Thaps37047.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0055

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0001	0.47	10000 120

Most Highly Correlated Transcripts

plastid_psb28 0.9792	bd1515 (bd1515) Adenylsuccinate_lyase_2 0.9326	270365 hypothetical protein 0.8651	269371 hypothetical protein 0.8582	bd1828 (bd1828) NA 0.8053	bd1876 (bd1876) NatB_MDM20 superfamily 0.8038
plastidpF 0.7888	21258 DUF3523 0.7802	11868 hypothetical protein 0.7788	385 RimI 0.7763

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PH-like superfamily		Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and...	-	139.346	1.28E-41	76 - 188	superfamily	266526

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_42712	PHATRDRAFT_42712	264091	299757	453068	Cre09.g394450.t1.2	AT5G58590.1	284057

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments