3707 PUB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3707 chr_3 PUB 1608608 1609404 - PUB

Synonyms

NCBI ID Ensembl Genomes exon ID
7451318 Thaps3707.2, Thaps3707.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0374

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0047
 0.45

Most Highly Correlated Transcripts

bd1839

(bd1839) NA
0.8321

24488

hypothetical protein
0.8196

37058

TRX_family
0.8194

263074

Synaptobrevin superfamily
0.8178

bd1756

(bd1756) NA
0.8168

bd1835

(bd1835) NA
0.8106

240

AAT_I superfamily
0.8082

269624

TIM_phosphate_binding superfamily
0.8065

2516

hypothetical protein
0.8039

bd1076

(bd1076) NA
0.8028

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PUB PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... cl15262 70.874 3.58E-16 20 - 122 specific 198416
PUB superfamily PNGase/UBA or UBX (PUB) domain of p97 adaptor proteins; The PUB domain is found in p97 adaptor... - 70.874 3.58E-16 20 - 122 superfamily 265658

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_40952 PHATRDRAFT_40952 243099 289663 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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