37137 HTH_XRE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37137 chr_13 HTH_XRE 783098 783613 + HTH_XRE

Synonyms

NCBI ID Ensembl Genomes exon ID
7447861 Thaps37137.1, Thaps37137.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0428

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0145
 0.29

Most Highly Correlated Transcripts

37118

FeThRed_B
0.8841

plastid_psb28

0.849

bd196

(bd196) Snf7 superfamily
0.8392

5664

hypothetical protein
0.8173

41655

Chloroa_b-bind
0.8168

34672

Sm_E
0.8126

269624

TIM_phosphate_binding superfamily
0.8109

35136

NA
0.8093

16114

PLN02350
0.8075

23806

Nuc_sug_transp
0.806

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the... cl17200 54.0962 5.61E-11 44 - 98 specific 238045
HTH_XRE superfamily Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the... - 54.0962 5.61E-11 44 - 98 superfamily 266550

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14374 PHATRDRAFT_14374 205264 302574 447165 Cre02.g108450.t1.2 AT3G58680.1 354933

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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