37979 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37979 chr_17 WD40 81361 82812 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7453114 Thaps37979.3, Thaps37979.1, Thaps37979.4, Thaps37979.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0409

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0093
 0.41

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.8598

23784

hypothetical protein
0.8553

17579

zf-CHY
0.8484

35531

SET
0.83

24525

hypothetical protein
0.8279

267971

MORN superfamily
0.8271

20768

hypothetical protein
0.8238

31069

S_TKc
0.8236

268443

SAICAR_synt_Sc
0.8182

35136

NA
0.8169

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 152.874 8.24E-43 112 - 409 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 152.874 8.24E-43 112 - 409 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 121.349 1.25E-30 33 - 409 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9020 PHATRDRAFT_9020 139790 255025 Not available Not available AT2G26060.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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