17579 zf-CHYThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
17579	chr_8	zf-CHY	242915	245436	-	zf-CHY

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443470	Thaps17579.3, Thaps17579.5, Thaps17579.1, Thaps17579.2, Thaps17579.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0475

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0219	0.41	1.2 7700

Most Highly Correlated Transcripts

31069 S_TKc 0.907	25233 hypothetical protein 0.9009	2154 hypothetical protein 0.8928	11563 hypothetical protein 0.8857	262923 Peptidase_M8 superfamily 0.881	269261 hypothetical protein 0.8809
36007 Aldolase_II superfamily 0.8795	5871 Methyltransf_21 superfamily 0.8766	24928 DHQ_Fe-ADH superfamily 0.8732	36995 LplA 0.8721

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
zf-CHY		CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many...	cl19861	70.0411		421 - 498	specific	253220
zf-CHY superfamily		CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many...	-	70.0411		421 - 498	superfamily	268214

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_5465	PHATRDRAFT_5465	187271	258821	Not available	Not available	Not available	495086

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

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