37980 Mpv17_PMP22
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37980 chr_17 Mpv17_PMP22 326011 327334 + Mpv17_PMP22

Synonyms

NCBI ID Ensembl Genomes exon ID
7442111 Thaps37980.1, Thaps37980.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0084
 0.43

Most Highly Correlated Transcripts

bd1806

(bd1806) AAT_I superfamily
0.9095

bd643

(bd643) NA
0.8787

bd1934

(bd1934) NA
0.831

bd690

(bd690) NA
0.8266

bd1840

(bd1840) NA
0.8202

bd1946

(bd1946) NA
0.8114

1440

hypothetical protein
0.7955

bd524

(bd524) NA
0.7924

bd1667

(bd1667) Mpp10
0.7763

bd1756

(bd1756) NA
0.775

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Mpv17_PMP22 superfamily Mpv17 / PMP22 family; The 22-kDa peroxisomal membrane protein (PMP22) is a major component of... - 59.5516 1.72E-11 274 - 336 superfamily 252388
Mpv17_PMP22 superfamily Mpv17 / PMP22 family; The 22-kDa peroxisomal membrane protein (PMP22) is a major component of... - 59.5516 1.72E-11 274 - 336 superfamily 252388

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15699 PHATRDRAFT_15699 200762 299771 46294 Cre09.g389208.t1.1 AT4G03410.1 Not available

KEGG

KEGG description KEGG Pathway
Peroxisome map04146

GO Terms

GO:0016021 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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