38129 (RPN5) PCI superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38129 chr_18 (RPN5) PCI superfamily 134856 136411 - PCI superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450938 Thaps38129.1, Thaps38129.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

33725

(RPN11) MPN_RPN11_CSN5
0.9094

bd1893

(bd1893) NA
0.9079

269593

(RPT4) RPT1
0.8993

21911

PH-like superfamily
0.894

34219

hypothetical protein
0.8881

bd463

(bd463) Aa_trans superfamily
0.884

bd758

(bd758) NA
0.8738

bd1662

(bd1662) TIGR00367
0.8694

bd789

(bd789) ABC_ATPase superfamily
0.8659

23013

Trs65
0.8516

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PCI superfamily PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). - 269.893 1.23E-84 43 - 478 superfamily 261183

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24865 PHATRDRAFT_24865 208360 318889 439509 Cre14.g632775.t1.1 AT5G09900.2 353751

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004298 GO:0004299 -

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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