33725 (RPN11) MPN_RPN11_CSN5
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33725 chr_4 (RPN11) MPN_RPN11_CSN5 1980619 1981551 + MPN_RPN11_CSN5

Synonyms

NCBI ID Ensembl Genomes exon ID
7452205 Thaps33725.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

28028

RPN6
0.9189

38129

(RPN5) PCI superfamily
0.9094

bd1893

(bd1893) NA
0.8904

26239

(RPN1) RPN1
0.8872

21911

PH-like superfamily
0.8855

40826

ER_lumen_recept
0.8836

1820

SET
0.8836

34018

RPN7
0.8821

3071

NA
0.8715

263489

WD40
0.8706

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5;... cl13996 419.736 5.56E-148 22 - 286 specific 163700
MPN superfamily Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains... - 419.736 5.56E-148 22 - 286 superfamily 265414

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20227 PHATRDRAFT_20227 268597 304804 73918 Cre01.g011500.t1.2 AT5G23540.1 563821

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0008233 GO:0008234 -

GO:0008233

peptidase activity

Details: 
Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
GO Category: 
MF

GO:0008234

cysteine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

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