38788 FYVEThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38788	chr_23	FYVE	148630	151917	+	FYVE

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442636	Thaps38788.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0160

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0015	0.38

Most Highly Correlated Transcripts

262826 DUF3608 superfamily 0.9295	263482 rad2 0.9224	5321 CobN-Mg_chel superfamily 0.9219	4959 hypothetical protein 0.9201	33225 MYSc 0.92	262171 CAP_ED 0.9196
8657 hypothetical protein 0.9177	34228 Strumpellin superfamily 0.9176	2065 hypothetical protein 0.9166	261059 hypothetical protein 0.9149

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
FYVE		FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with...	cl17764	80.5577	4.61E-18	238 - 294	specific	238022
FYVE superfamily		FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with...	-	80.5577	4.61E-18	238 - 294	superfamily	266823

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_16608	PHATRDRAFT_16608	165124	157316	Not available	Not available	AT1G20110.1	298516

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008270 -

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