38860 HELICcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
38860	chr_23	HELICc	32760	33836	-	HELICc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442701	Thaps38860.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0353

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0003	0.47	11000 2

Most Highly Correlated Transcripts

5779 hypothetical protein 0.8399	586 PTZ00018 0.8371	5321 CobN-Mg_chel superfamily 0.817	263864 0.8028	262815 (Tp_Myb1R_SHAQKYF2) MYB DNA binding protein/ transcription factor-like protein 0.7998	263989 (HSF13) hypothetical protein 0.7981
34228 Strumpellin superfamily 0.7956	5777 PRO8NT 0.7939	3551 hypothetical protein 0.7923	261018 PDEase_I 0.7923

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	83.056	1.34E-19	67 - 217	superfamily	238034
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	83.056	1.34E-19	67 - 217	superfamily	238034

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_6292	PHATRDRAFT_6292	187564	189181	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

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