39710 PTZ00258
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39710 chr_2 PTZ00258 2266879 2268275 - PTZ00258

Synonyms

NCBI ID Ensembl Genomes exon ID
7450446 Thaps39710.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0291

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0016
 0.55

Most Highly Correlated Transcripts

3304

(MNT1) NMT1
0.9045

268443

SAICAR_synt_Sc
0.8983

40463

class_II_aaRS-like_core superfamily
0.8944

38964

Chorismate_synthase
0.8854

bd1765

(bd1765) NA
0.8794

16746

Mito_carr
0.8685

264164

Porin3_Tom40
0.867

bd687

(bd687) NA
0.8651

40200

TRX_reduct
0.8604

36007

Aldolase_II superfamily
0.8589

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
YchF YchF GTPase; YchF is a member of the Obg family, which includes four other subfamilies of GTPases:... cl17170 321.716 8.03E-108 15 - 314 specific 206687
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 321.716 8.03E-108 15 - 314 superfamily 266525
TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally... cl15768 145.41 1.51E-42 316 - 402 specific 133440
TGS superfamily The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is... - 145.41 1.51E-42 316 - 402 superfamily 265779
PTZ00258 GTP-binding protein; Provisional - 497.931 3.06E-175 3 - 405 multi-dom 240334

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
1921 PHATRDRAFT_23371 PHATRDRAFT_23371 260574 320819 Not available Cre02.g083600.t1.2 AT1G30580.1 551993

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0005554 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0005554

NA

Details: 
NA
GO Category: 
NA

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