40669 Ubiquitin
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
40669 chr_5 Ubiquitin 562048 563155 + Ubiquitin
NCBI ID Ensembl Genomes exon ID
7451773 Thaps40669.1, Thaps40669.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0046
Normalized Mean Residue
Thaps_bicluster_0045
0.44
hypothetical protein
0.9265
(RL44) PTZ00157
0.9221
(Rpl27) KOW_RPL27
0.9132
(RS27) PLN00209
0.9123
(RL11A) PTZ00156
0.9105
PTZ00106
0.9098
(RS11) Ribosomal_S17 superfamily
0.9039
(RS15A) PTZ00158
0.9031
(RS25) Ribosomal_S25
0.8971
(RL23a) PTZ00191
0.896
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ubiquitin Ubiquitin; Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric... cl00155 159.265 6.02E-51 1 - 76 specific 176398
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 159.265 6.02E-51 1 - 76 superfamily 260222
Ribosomal_S27 Ribosomal protein S27a; This family of ribosomal proteins consists mainly of the 40S ribosomal... cl00876 62.8642 3.80E-14 103 - 145 specific 250734
Ribosomal_S27 superfamily Ribosomal protein S27a; This family of ribosomal proteins consists mainly of the 40S ribosomal... - 62.8642 3.80E-14 103 - 145 superfamily 260673
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27118 PHATRDRAFT_27118 267726 263500 434266 Cre01.g007051.t1.2 AT1G23410.1 355036
KEGG description KEGG Pathway
Ribosome map03010
GO:0006464 GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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