42074 PRK09224
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42074 chr_12 PRK09224 311889 314126 - PRK09224

Synonyms

NCBI ID Ensembl Genomes exon ID
7445787 Thaps42074.3, Thaps42074.1, Thaps42074.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Most Highly Correlated Transcripts

12836

EEP superfamily
0.8819

41403

ABCC_MRP_domain2
0.87

22367

MPP_superfamily superfamily
0.8659

13448

Sec1
0.863

24042

cytidine_deaminase-like superfamily
0.847

260852

PRK04194
0.8469

268889

SNF2_N
0.8451

28865

AarF
0.8415

13393

PLN02321
0.8392

10554

hypothetical protein
0.8378

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen.... cl00342 437.304 1.63E-149 126 - 435 specific 107205
Trp-synth-beta_II superfamily Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-... - 437.304 1.63E-149 126 - 435 superfamily 260370
ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine... cl09141 123.816 1.00E-33 545 - 626 specific 153179
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 113.797 4.76E-30 453 - 535 superfamily 263730
ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine... cl09141 113.797 4.76E-30 453 - 535 specific 153178
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 113.797 4.76E-30 453 - 535 superfamily 263730
PRK09224 threonine dehydratase; Reviewed - 795.498 0 125 - 627 multi-dom 236417

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49047 PHATRDRAFT_49047 183228 201919 465191 Cre02.g073200.t1.2 AT3G10050.1 346791

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006520 GO:0004794 GO:0009097 GO:0003824 GO:0008152 -

GO:0006520

cellular amino acid metabolic process

Details: 
The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
GO Category: 
BP

GO:0004794

L-threonine ammonia-lyase activity

Details: 
Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3.
GO Category: 
MF

GO:0009097

isoleucine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of isoleucine, (2R*,3R*)-2-amino-3-methylpentanoic acid.
GO Category: 
BP

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

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