4576 MATE_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4576 chr_4 MATE_like superfamily 1384579 1386445 - MATE_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448818 Thaps4576.3, Thaps4576.2, Thaps4576.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0252

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0049
 0.45

Most Highly Correlated Transcripts

9148

hypothetical protein
0.92

8384

hypothetical protein
0.9196

263051

ZntA
0.9126

3331

Bac_rhamnosid superfamily
0.9035

bd1893

(bd1893) NA
0.9025

7299

hypothetical protein
0.9023

23952

hypothetical protein
0.9016

31298

S_TKc
0.8985

9270

hypothetical protein
0.8982

261056

(APB3) Adaptin_N
0.8913

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MATE_like superfamily Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins... - 214.347 5.84E-63 104 - 547 superfamily 263758
NorM Na+-driven multidrug efflux pump [Defense mechanisms] - 182.039 6.75E-51 106 - 563 multi-dom 223608

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35587 PHATRDRAFT_35587 268811 172243 253030 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006855 GO:0015238 GO:0015297 GO:0016020 -

GO:0006855

drug transmembrane transport

Details: 
The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0015238

drug transmembrane transporter activity

Details: 
Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO Category: 
MF

GO:0015297

antiporter activity

Details: 
Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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