5216 RluA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5216 chr_5 RluA 639438 641447 - RluA

Synonyms

NCBI ID Ensembl Genomes exon ID
7446404 Thaps5216.2, Thaps5216.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0001

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0063
 0.47

Most Highly Correlated Transcripts

bd763

(bd763) NA
0.9138

33663

PLN02649
0.8353

28125

PLN00203
0.8274

28326

lytB_ispH
0.8133

36669

TPT
0.8079

574

PRK05444
0.8033

261407

NAD_binding_8 superfamily
0.7988

268592

VDE superfamily
0.7939

bd1435

(bd1435) ycf3
0.7933

17854

HemeO
0.7904

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 145.173 2.15E-40 282 - 579 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 145.173 2.15E-40 282 - 579 superfamily 260207
RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] - 177.118 1.86E-50 276 - 592 multi-dom 223638

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15666 PHATRDRAFT_15666 152297 190684 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 GO:0016439 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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