bd1435 (bd1435) ycf3Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
bd1435	bd_26x41	(bd1435) ycf3	24120	24674	-	ycf3

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0063

Most Highly Correlated Transcripts

ThpsCp038 (ycf3) photosystem I assembly protein Ycf3 1	ThpsCp082 (rpl34) ribosomal protein L34 0.9607	ThpsCp134 (rpl34) ribosomal protein L34 0.9607	bd1243 (bd1243) rpl33 0.9574	ThpsCp036 (rpl33) ribosomal protein L33 0.9574	ThpsCp025 (rpl20) ribosomal protein L20 0.9466
ThpsCp079 (rpl21) ribosomal protein L21 0.9345	ThpsCp137 (rpl21) ribosomal protein L21 0.9345	ThpsCp104 (rpl29) 50S ribosomal protein L29 0.9327	bd93 (bd93) NA 0.9298

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ycf3		photosystem I assembly protein Ycf3	-	264.562	1.74E-90	5 - 179	multi-dom	176974

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	210767	Not available	Not available	ATCG00360.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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