6803 (RPE1) RPE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6803 chr_7 (RPE1) RPE 529872 530639 + RPE

Synonyms

NCBI ID Ensembl Genomes exon ID
7446232 Thaps6803.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0084
 0.43

Most Highly Correlated Transcripts

5053

hypothetical protein
0.83

269925

AAA_12 superfamily
0.825

bd1828

(bd1828) NA
0.8159

41419

(RT4) RpsD
0.8152

261885

RRM1_RBM34
0.8144

20609

hypothetical protein
0.8142

22334

hypothetical protein
0.8115

36007

Aldolase_II superfamily
0.8112

2392

hypothetical protein
0.8085

19623

RRM3_MEI2_like
0.8023

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-... cl17186 330.596 1.15E-114 31 - 246 specific 238244
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 330.596 1.15E-114 31 - 246 superfamily 266538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_53935 PHATRDRAFT_53935 Not available Not available 438704 Cre12.g511900.t1.2 AT5G61410.2 251615

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004750 GO:0005975 -

GO:0004750

ribulose-phosphate 3-epimerase activity

Details: 
Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

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