7341 (Tpt2) tpt
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7341 chr_8 (Tpt2) tpt 2392 3920 + tpt

Synonyms

NCBI ID Ensembl Genomes exon ID
7452389 Thaps7341.3, Thaps7341.2, Thaps7341.4, Thaps7341.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0066

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0182
 0.48

Most Highly Correlated Transcripts

bd1645

(bd1645) tpt
0.9785

bd1306

(bd1306) NA
0.9439

bd218

(bd218) Chloroa_b-bind superfamily
0.938

bd1304

(bd1304) Ycf4
0.9319

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9308

bd1387

(bd1387) psbE
0.9286

bd1820

(bd1820) Fasciclin
0.9275

bd1403

(bd1403) NA
0.9252

bd1765

(bd1765) NA
0.9239

bd1342

(bd1342) psaL
0.9185

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPT superfamily Triose-phosphate Transporter family; This family includes transporters with a specificity for... - 66.0396 3.18E-13 240 - 385 superfamily 251760
tpt Tpt phosphate/phosphoenolpyruvate translocator; The 6-8 TMS Triose-phosphate Transporter (TPT)... - 122.142 1.17E-31 93 - 397 multi-dom 129898

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_24610 PHATRDRAFT_24610 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005622 GO:0006355 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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