7487 MFS_1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7487 chr_8 MFS_1 357821 359309 - MFS_1

Synonyms

NCBI ID Ensembl Genomes exon ID
7450127 Thaps7487.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0250
 0.30

Most Highly Correlated Transcripts

36235

p450 superfamily
0.9277

268592

VDE superfamily
0.9251

38608

SDR_a5
0.924

bd1857

(bd1857) DnaJ
0.9223

16737

Mito_carr
0.9199

36669

TPT
0.9167

2462

hypothetical protein
0.9121

31169

PRX_BCP
0.9081

268773

Gst
0.9066

261608

PLN02585
0.9052

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 82.7469 1.19E-17 61 - 426 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 82.7469 1.19E-17 61 - 426 superfamily 119392
MFS_1 Major Facilitator Superfamily; Major Facilitator Superfamily. - 93.6384 2.45E-21 63 - 425 multi-dom 254360

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43754 PHATRDRAFT_43754 187420 296264 310007 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0015520 GO:0015904 GO:0016021 -

GO:0015520

tetracycline:hydrogen antiporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + tetracycline(in) = H+(in) + tetracycline(out).
GO Category: 
MF

GO:0015904

tetracycline transport

Details: 
The directed movement of tetracycline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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