7804 MATE_like superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7804 chr_8 MATE_like superfamily 1175994 1177614 - MATE_like superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452377 Thaps7804.3, Thaps7804.1, Thaps7804.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0267

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0097
 0.39

Most Highly Correlated Transcripts

17511

DUS_like_FMN
0.8309

23568

hypothetical protein
0.8133

bd1652

(bd1652) ABC_ATPase superfamily
0.7974

23331

RAP
0.7937

263669

UvrD
0.7925

26492

PRK05385
0.7855

10053

hypothetical protein
0.7828

25539

hypothetical protein
0.7816

12943

NARP1
0.7772

6606

obgE
0.7738

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MATE_like superfamily Multidrug and toxic compound extrusion family and similar proteins; The integral membrane proteins... - 154.256 1.40E-41 93 - 479 superfamily 263758
matE putative efflux protein, MATE family; The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66)... - 114.264 2.35E-28 101 - 476 multi-dom 233130

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44888 PHATRDRAFT_44888 231666 195053 249058 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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