8329 GH_JThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8329	chr_10	GH_J	305652	307277	+	GH_J

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447037	Thaps8329.2, Thaps8329.3, Thaps8329.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0001

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0067	0.47	12 0.35

Most Highly Correlated Transcripts

28125 PLN00203 0.9399	261608 PLN02585 0.9138	270328 hypothetical protein 0.9079	31169 PRX_BCP 0.9047	269147 NAD_binding_8 superfamily 0.8872	36235 p450 superfamily 0.8845
37534 MRP-like 0.8739	574 PRK05444 0.8647	268908 Trans_IPPS_HH 0.8624	268592 VDE superfamily 0.8612

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GH_J		Glycosyl hydrolase families 32 and 68, which for the clan GH-J; This glycosyl hydrolase family clan...	cl14647	94.4296	5.87E-22	300 - 464	specific	185720
GH43_62_32_68 superfamily		Glycosyl hydrolase families: GH43, GH62, GH32, GH68; Members of the glycosyl hydrolase families 32...	-	94.4296	5.87E-22	300 - 464	superfamily	265439

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_43831	PHATR_43831	250733	287841	Not available	Cre06.g273050.t1.2	AT1G26761.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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