8500 PRP38 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8500 chr_10 PRP38 superfamily 742094 743997 + PRP38 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446881 Thaps8500.3, Thaps8500.1, Thaps8500.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0135

Most Highly Correlated Transcripts

21947

GlcNAc superfamily
0.9432

13448

Sec1
0.9298

1906

hypothetical protein
0.9297

40929

SrmB
0.928

260890

MAD
0.9271

6693

hypothetical protein
0.9263

17582

HAD-SF-IIA-hyp3
0.9237

268338

(FAO1) fadB
0.9234

261400

NA
0.9233

262287

hypothetical protein
0.9218

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRP38 superfamily PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from yeast.... - 150.402 9.56E-43 48 - 196 superfamily 251906

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45533 PHATRDRAFT_45533 224043 299499 73755 Cre03.g178300.t1.2 AT5G37370.1 551733

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

Not available -

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