268338 (FAO1) fadB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268338 chr_2 (FAO1) fadB 1876228 1878722 + fadB

Synonyms

NCBI ID Ensembl Genomes exon ID
7452467 Thaps268338.1, Thaps268338.3, Thaps268338.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0171

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9994

2593

ANK
0.9333

bd392

(bd392) DEXDc
0.9293

261400

NA
0.928

8489

GlcNAc superfamily
0.9256

21420

hypothetical protein
0.9248

8500

PRP38 superfamily
0.9234

264556

FBPase
0.9231

36494

NBD_sugar-kinase_HSP70_actin superfamily
0.9231

268868

(ERCC2) rad3
0.9192

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of... cl18948 166.582 2.75E-47 7 - 204 specific 119339
crotonase-like superfamily Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of... - 166.582 2.75E-47 7 - 204 superfamily 267301
3HCDH_N superfamily 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin. - 225.118 1.85E-68 328 - 510 superfamily 251505
3HCDH_N superfamily 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; This family also includes lambda crystallin. - 225.118 1.85E-68 328 - 510 superfamily 251505
3HCDH superfamily 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; This family also includes lambda crystallin.... - 63.3794 5.40E-12 512 - 625 superfamily 250086
3HCDH superfamily 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; This family also includes lambda crystallin.... - 63.3794 5.40E-12 512 - 625 superfamily 250086
fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed - 337.605 4.72E-104 25 - 730 multi-dom 183293

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_55069 PHATRDRAFT_55069 210327 325815 440242 Cre16.g695050.t1.2 AT3G06860.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0006631 GO:0016491 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0006631

fatty acid metabolic process

Details: 
The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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