8830 (rfC_1) PLN03025Thalassiosira pseudonana

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8830	chr_11a	(rfC_1) PLN03025	640419	641997	-	PLN03025

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445395	Thaps8830.1, Thaps8830.2, Thaps8830.3, Thaps8830.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0430

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0018	0.42

Most Highly Correlated Transcripts

11585 CDC27 0.8711	264430 (GGPS3) Trans_IPPS_HT 0.8686	33432 TCP1_beta 0.8584	4142 LRR_RI superfamily 0.8556	24451 TFIIS_I superfamily 0.8541	6964 RING superfamily 0.8537
10774 hypothetical protein 0.8521	18090 Thioredoxin_like superfamily 0.8514	34306 Thioredoxin_like superfamily 0.8486	7084 Cupin_8 superfamily 0.8464

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	cl18944	96.0611	6.31E-24	98 - 231	specific	99707
AAA superfamily	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	96.0611	6.31E-24	98 - 231	superfamily	267297
Rep_fac_C superfamily	Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C...	-	101.044	2.17E-26	303 - 391	superfamily	254867
Rep_fac_C superfamily	Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C...	-	101.044	2.17E-26	303 - 391	superfamily	254867
PLN03025	replication factor C subunit; Provisional	-	629.068	0	83 - 401	multi-dom	178596

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49374	PHATRDRAFT_49374	207120	47641	439101	Cre07.g337150.t1.2	AT1G63160.1	332696

KEGG

KEGG description	KEGG Pathway
Mismatch repair	map03430

GO Terms

GO:0003677 GO:0005663 GO:0006260 GO:0000166 GO:0017111 GO:0005524 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003677

DNA binding

Details:

Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

GO Category:

GO:0005663

DNA replication factor C complex

Details:

A complex of five polypeptides in eukaryotes, and two in prokaryotes, that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase.

GO Category:

GO:0006260

DNA replication

Details:

The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.

GO Category:

GO:0000166

nucleotide binding

Details:

Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

GO Category:

GO:0017111

nucleoside-triphosphatase activity

Details:

Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.

GO Category:

GO:0005524

ATP binding

Details:

Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

GO Category:

GO:0003887

DNA-directed DNA polymerase activity

Details:

Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.

GO Category:

8830 (rfC_1) PLN03025
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003677

GO:0005663

GO:0006260

GO:0000166

GO:0017111

GO:0005524

GO:0003887

GO:0003889

GO:0003890

GO:0003891

GO:0003893

GO:0003894

GO:0003895

GO:0015999

GO:0016000

GO:0016448

GO:0016449

GO:0016450

GO:0016451

GO:0016452

GO:0019984

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