24451 TFIIS_I superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
24451	chr_12	TFIIS_I superfamily	350218	352261	+	TFIIS_I superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449401	Thaps24451.2, Thaps24451.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0430

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0097	0.39	0.37 0.009

Most Highly Correlated Transcripts

267979 HCO3_cotransp superfamily 0.927	268443 SAICAR_synt_Sc 0.9261	40200 TRX_reduct 0.9246	21464 BTB 0.9121	35136 NA 0.8987	21044 hypothetical protein 0.8984
2622 hypothetical protein 0.8984	269437 EF hand-containing protein 0.8963	37118 FeThRed_B 0.8943	24051 hypothetical protein 0.8933

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TFIIS_I superfamily		N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain...	-	87.833	5.47E-19	296 - 441	superfamily	260216

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45278	PHATRDRAFT_45278	178756	225920	Not available	Cre10.g441000.t1.2	AT1G32130.1	534567

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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