9002 SQS_PSYThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9002	chr_12	SQS_PSY	289719	290819	-	SQS_PSY

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449392	Thaps9002.2, Thaps9002.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0382

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0016	0.55	11 12

Most Highly Correlated Transcripts

13448 Sec1 0.8444	12899 AAA 0.8416	bd1813 (bd1813) NA 0.8307	22407 hypothetical protein 0.8115	264598 AAA 0.8108	262422 DEXDc 0.8062
11500 ANK 0.8056	268737 hypothetical protein 0.8016	24720 hypothetical protein 0.7985	32782 MPN superfamily 0.7968

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SQS_PSY		Squalene/phytoene synthase; Squalene/phytoene synthase.	cl00210	115.098	7.27E-30	1 - 293	specific	249904
Isoprenoid_Biosyn_C1 superfamily		Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (...	-	115.098	7.27E-30	1 - 293	superfamily	260263

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_33756	PHATRDRAFT_33756	215540	125789	Not available	Cre03.g194300.t1.2	AT1G62730.1	299329

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments