6519 LRR_RI superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6519	chr_6	LRR_RI superfamily	1785148	1786605	+	LRR_RI superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444600	Thaps6519.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0270

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0005	0.39	0.000011 0.6

Most Highly Correlated Transcripts

bd1801 (bd1801) NA 0.7579	bd738 (bd738) NA 0.7571	24565 COG3899 0.7562	3136 hypothetical protein 0.7548	20792 hypothetical protein 0.7421	33970 rad25 0.7397
bd827 (bd827) NA 0.7357	263610 COG3899 0.7348	22046 COG5134 superfamily 0.7337	9009 hypothetical protein 0.7285

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_RI superfamily		Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue...	-	95.5001	4.57E-22	114 - 440	superfamily	238064

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments