6524 phytoene_desat
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6524 chr_6 phytoene_desat 1793806 1795753 - phytoene_desat

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps6524.1, Thaps6524.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0014

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0156
 0.33

Most Highly Correlated Transcripts

6524

phytoene_desat
1

bd1474

(bd1474) phytoene_desat
1

bd208

(bd208) DUF3529
0.9533

bd1306

(bd1306) NA
0.9502

10943

(DXR1) PLN02696
0.9384

bd1403

(bd1403) NA
0.9383

ThpsCt017

(trnG(ucc))
0.9275

11822

hypothetical protein
0.927

bd1645

(bd1645) tpt
0.9262

bd1387

(bd1387) psbE
0.9258

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_binding_8 NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. cl19134 75.6103 8.81E-17 88 - 154 specific 257775
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 75.6103 8.81E-17 88 - 154 superfamily 267487
phytoene_desat phytoene desaturase; Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a... - 717.395 0 85 - 552 multi-dom 131778

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 430592 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0004497 GO:0016491 GO:0016937 GO:0017099 GO:0019109 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0004497

monooxygenase activity

Details: 
Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
GO Category: 
MF

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0016937

short-branched-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a short branched chain fatty acid residue.
GO Category: 
MF

GO:0017099

very-long-chain-acyl-CoA dehydrogenase activity

Details: 
Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor, where the acyl group is a very long chain fatty acid residue. A very long-chain fatty acid is a fatty acid which has a chain length greater than C22.
GO Category: 
MF

GO:0019109

NA

Details: 
NA
GO Category: 
NA

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