12075 ZnMc superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12075 chr_23 ZnMc superfamily 306879 310679 + ZnMc superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0490

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0029
 0.39

Most Highly Correlated Transcripts

4108

hypothetical protein
0.8637

bd827

(bd827) NA
0.8583

bd759

(bd759) NA
0.7783

bd738

(bd738) NA
0.7761

bd1801

(bd1801) NA
0.7752

bd1097

(bd1097) NA
0.7739

bd737

(bd737) NA
0.7523

bd692

(bd692) NA
0.7367

11243

hypothetical protein
0.7351

bd521

(bd521) NA
0.7328

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ZnMc superfamily Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,... - 97.078 1.20E-22 243 - 409 superfamily 260167

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008237 GO:0008270 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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